FASTQ Workflow

This workflow is used for ingesting the result of the base call to sequence conversion step (sometimes also referred to as “demultiplexing” of raw Illumina base call data). The overall pattern follows the one described in the section Common Multi-File Workflow. The specialization are:

done file detection

• is performed by the presence of a marker file configured by RODEOS_ILLUMINA_FASTQ_DONE_MARKER_FILE